- git clone firstname.lastname@example.org:belbio/bel_resources.git to clone the BEL Resources project locally
- Make sure BEL.bio API is running with the elasticsearch and arangodb containers - Instructions
- make install will setup a virtualenv and pip install the requirements
- Setup your configuration file (Configuration)
- make load_all will download remote namespace/orthology files, convert into load-able formats and then load into elasticsearch and arangodb (Namespaces)
- make clean_all will clean out all loaded namespaces and orthologies
Remote database files (e.g. Entrez Gene, SwissProt) are downloaded to <repo_dir>/downloads (gzipped). BEL Namespace files for loading into elasticsearch are created from source database files and stored in <repo_dir>/data/namespaces. Orthology files are stored in <repo_dir>/data/orthologs.